2022
- Comparison of rRNA depletion methods for efficient bacterial mRNA sequencing. Scientific Reports 12 (1), 2022 mehr…
2021
- ddPCR allows 16S rRNA gene amplicon sequencing of very small DNA amounts from low-biomass samples. -, 2021, mehr…
- Full-Length SSU rRNA Gene Sequencing Allows Species-Level Detection of Bacteria, Archaea, and Yeasts Present in Milk. Microorganisms 9 (6), 2021, 1251 mehr…
- Pre-digest of unprotected DNA by Benzonase improves the representation of living skin bacteria and efficiently depletes host DNA. Microbiome 9 (1), 2021 mehr…
- Alteration of Intestinal Microbiome of Clostridioides difficile-Infected Hamsters during the Treatment with Specific Cow Antibodies. Antibiotics 10 (6), 2021, 724 mehr…
- Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing. mSphere, 2021 mehr…
- Spotlight on alternative frame coding: two long overlapping genes in Pseudomonas aeruginosa are translated and under purifying selection. -, 2021, mehr…
- Influence of a Biotechnologically Produced Oyster Mushroom (Pleurotus sajor-caju) on the Gut Microbiota and Microbial Metabolites in Obese Zucker Rats. Journal of Agricultural and Food Chemistry 69 (5), 2021, 1524-1535 mehr…
- A diet-specific microbiota drives Salmonella Typhimurium to adapt its in vivo response to plant-derived substrates. Animal Microbiome 3 (1), 2021 mehr…
- Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling. ISME Communications 1 (1), 2021 mehr…
- Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome. Nature Genetics 53 (2), 2021, 147-155 mehr…
- Processing Matters in Nutrient-Matched Laboratory Diets for Mice—Microbiome. Animals 11 (3), 2021, 862 mehr…
- Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria. mSystems 6 (3), 2021 mehr…
2020
- Are Antisense Proteins in Prokaryotes Functional? Frontiers in Molecular Biosciences 7, 2020 mehr…
- Recommendations for bacterial ribosome profiling experiments based on bioinformatic evaluation of published data. Journal of Biological Chemistry 295 (27), 2020, 8999-9011 mehr…
- Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes. Cell Host & Microbe 28 (2), 2020, 258-272.e6 mehr…
- Comparing Circadian Rhythmicity in the Human Gut Microbiome. STAR Protocols 1 (3), 2020, 100148 mehr…
- A Novel Primer Mixture for GH48 Genes: Quantification and Identification of Truly Cellulolytic Bacteria in Biogas Fermenters. Microorganisms 8 (9), 2020, 1297 mehr…
- Investigation of Adiposity Measures and Operational Taxonomic unit (OTU) Data Transformation Procedures in Stool Samples from a German Cohort Study Using Machine Learning Algorithms. Microorganisms 8 (4), 2020, 547 mehr…
- A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nature Communications 11 (1), 2020 mehr…
2019
- Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family. Microbiome 7 (1), 2019 mehr…
- Complex Bacterial Consortia Reprogram the Colitogenic Activity of Enterococcus faecalis in a Gnotobiotic Mouse Model of Chronic, Immune-Mediated Colitis. Frontiers in Immunology 10, 2019 mehr…
- Comparison of sampling techniques and different media for the enrichment and isolation of cellulolytic organisms from biogas fermenters. Systematic and Applied Microbiology 42 (4), 2019, 481-487 mehr…
2018
- Improving the reliability of RNA-seq: Approaching single-cell transciptomics to explore individuality in bacteria. In: Information- and Communication Theory in Molecular Biology. Springer International Publishing, 2018, 181 - 198 mehr…
- The Novel Anaerobiosis-Responsive Overlapping Gene ano Is Overlapping Antisense to the Annotated Gene ECs2385 of Escherichia coli O157:H7 Sakai. Frontiers in Microbiology 9, 2018 mehr…
- A novel short L-arginine responsive protein-coding gene (laoB) antiparallel overlapping to a CadC-like transcriptional regulator in Escherichia coli O157:H7 Sakai originated by overprinting. BMC Evolutionary Biology 18 (1), 2018 mehr…
- Finding new overlapping genes and their theory (FOG Theory). In: Information- and Communication Theory in Molecular Biology. Springer International Publishing, 2018, 137-159 mehr…
- The novel EHEC gene asa overlaps the TEGT transporter gene in antisense and is regulated by NaCl and growth phase. Scientific Reports 8 (1), 2018 mehr…
2017
- Randomized controlled trial on the impact of early-life intervention with bifidobacteria on the healthy infant fecal microbiota and metabolome. The American Journal of Clinical Nutrition, 2017, ajcn157529 mehr…
- Improving the Reliability of RNA-seq: Approaching Single-Cell Transcriptomics To Explore Individuality in Bacteria. In: Information- and Communication Theory in Molecular Biology. Springer International Publishing, 2017 mehr…
- Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome. PLOS ONE 12 (9), 2017, e0184119 mehr…
- Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons. PeerJ 5, 2017, e2836 mehr…
- Differentiation of ncRNAs from small mRNAs in Escherichia coli O157:H7 EDL933 (EHEC) by combined RNAseq and RIBOseq – ryhB encodes the regulatory RNA RyhB and a peptide, RyhP. BMC Genomics 18 (1), 2017 mehr…
- OP031 Long-term safety and tolerability of oral tofacitinib in patients with Crohn's disease: results from a phase 2 open-label 48-week extension study. Journal of Crohn's and Colitis 11 (suppl_1), 2017, S18-S19 mehr…
2016
- Draft Genome Sequences of Three European Laboratory Derivatives from EnterohemorrhagicEscherichia coliO157:H7 Strain EDL933, Including Two Plasmids: TABLE 1 . Genome Announcements 4 (2), 2016, e01331-15 mehr…
- Transcriptional and translational regulation by RNA thermometers, riboswitches and the sRNA DsrA inEscherichia coliO157:H7 Sakai under combined cold and osmotic stress adaptation. FEMS Microbiology Letters 364 (2), 2016, fnw262 mehr…
- IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies. Scientific Reports 6 (1), 2016 mehr…
- The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. Nature Microbiology 1 (10), 2016, 16131 mehr…
- Corrigendum: The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. Nature Microbiology 1 (11), 2016, 16219 mehr…
- Oral versus intravenous iron replacement therapy distinctly alters the gut microbiota and metabolome in patients with IBD. Gut 66 (5), 2016, 863-871 mehr…
- Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC). BMC Genomics 17 (1), 2016 mehr…
- VisExpress: Visual exploration of differential gene expression data. Information Visualization 16 (1), 2016, 48-73 mehr…
2015
- Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence. Gut 65 (2), 2015, 225-237 mehr…
2014
- Comparison of strand-specific transcriptomes of enterohemorrhagic Escherichia coli O157:H7 EDL933 (EHEC) under eleven different environmental conditions including radish sprouts and cattle feces. BMC Genomics 15 (1), 2014, 353 mehr…
2013
- Short Barcodes for Next Generation Sequencing. PLoS ONE 8 (12), 2013, e82933 mehr…
2012
- Listeria weihenstephanensis sp. nov., isolated from the water plant Lemna trisulca taken from a freshwater pond. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 63 (Pt 2), 2012, 641-647 mehr…