2024
- Exploring the Potential Probiotic Properties of Bifidobacterium breve DSM 32583—A Novel Strain Isolated from Human Milk. Probiotics and Antimicrobial Proteins, 2024 more…
- Diet changes due to urbanization in South Africa are linked to microbiome and metabolome signatures of Westernization and colorectal cancer. Nature Communications 15 (1), 2024 more…
2023
- Draft genome sequence of <i>Bifidobacterium breve</i> DSM 32583, isolated from human milk. Microbiology Resource Announcements 12 (11), 2023 more…
- Systematic Evaluation of Clinical, Nutritional and Fecal Microbial Factors for their Association with Colorectal Polyps. Clinical and Translational Gastroenterology, 2023 more…
2022
2021
- Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing. mSphere 6 (1), 2021 more…
- ddPCR allows 16S rRNA gene amplicon sequencing of very small DNA amounts from low-biomass samples. BMC Microbiology 21 (1), 2021 more…
- Full-Length SSU rRNA Gene Sequencing Allows Species-Level Detection of Bacteria, Archaea, and Yeasts Present in Milk. Microorganisms 9 (6), 2021, 1251 more…
- Pre-digest of unprotected DNA by Benzonase improves the representation of living skin bacteria and efficiently depletes host DNA. Microbiome 9 (1), 2021 more…
- Influence of a Biotechnologically Produced Oyster Mushroom (Pleurotus sajor-caju) on the Gut Microbiota and Microbial Metabolites in Obese Zucker Rats. Journal of Agricultural and Food Chemistry 69 (5), 2021, 1524-1535 more…
- A diet-specific microbiota drives Salmonella Typhimurium to adapt its in vivo response to plant-derived substrates. Animal Microbiome 3 (1), 2021 more…
- Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling. ISME Communications 1 (1), 2021 more…
- Draft Genome Sequences of Enterobacter spp., Lelliottia spp., and Serratia spp., Coliform Bacteria from Drinking Water Reservoirs and Lakes. Microbiology Resource Announcements 10 (32), 2021 more…
- Genome-wide association study in 8,956 German individuals identifies influence of ABO histo-blood groups on gut microbiome. Nature Genetics 53 (2), 2021, 147-155 more…
- Gut Bacterial Dysbiosis and Instability is Associated with the Onset of Complications and Mortality in COVID-19. -, Gut Microbes, 2021, more…
- Processing Matters in Nutrient-Matched Laboratory Diets for Mice—Microbiome. Animals 11 (3), 2021, 862 more…
- Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria. mSystems, 2021 more…
2020
- Are Antisense Proteins in Prokaryotes Functional? Frontiers in Molecular Biosciences 7, 2020 more…
- Recommendations for bacterial ribosome profiling experiments based on bioinformatic evaluation of published data. Journal of Biological Chemistry 295 (27), 2020, 8999-9011 more…
- Longicatena. In: In Bergey's Manual of Systematics of Archaea and Bacteria . Springer, 2020 more…
- Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes. Cell Host & Microbe 28 (2), 2020, 258-272.e6 more…
- Comparing Circadian Rhythmicity in the Human Gut Microbiome. STAR Protocols 1 (3), 2020, 100148 more…
- A Novel Primer Mixture for GH48 Genes: Quantification and Identification of Truly Cellulolytic Bacteria in Biogas Fermenters. Microorganisms 8 (9), 2020, 1297 more…
- Salmonella persistence in soil depends on reciprocal interactions with indigenous microorganisms. Environmental Microbiology, 2020 more…
- Investigation of Adiposity Measures and Operational Taxonomic unit (OTU) Data Transformation Procedures in Stool Samples from a German Cohort Study Using Machine Learning Algorithms. Microorganisms 8 (4), 2020, 547 more…
- A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nature Communications 11 (1), 2020 more…
- A Novel pH-Regulated, Unusual 603 bp Overlapping Protein Coding Gene pop Is Encoded Antisense to ompA in Escherichia coli O157:H7 (EHEC). Frontiers in Microbiology 11, 2020 more…
2019
- Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family. Microbiome 7 (1), 2019 more…
- Complex Bacterial Consortia Reprogram the Colitogenic Activity of Enterococcus faecalis in a Gnotobiotic Mouse Model of Chronic, Immune-Mediated Colitis. Frontiers in Immunology 10, 2019 more…
- Comparison of sampling techniques and different media for the enrichment and isolation of cellulolytic organisms from biogas fermenters. Systematic and Applied Microbiology 42 (4), 2019, 481-487 more…
- Draft Genome Sequence of Anaerosphaera sp. Strain GS7-6-2, a Coccal Bacterium Isolated from a Biogas-Related Environment. Microbiology Resource Announcements 8 (17), 2019 more…
2018
- The Novel Anaerobiosis-Responsive Overlapping Gene ano Is Overlapping Antisense to the Annotated Gene ECs2385 of Escherichia coli O157:H7 Sakai. Frontiers in Microbiology 9, 2018 more…
- A novel short L-arginine responsive protein-coding gene (laoB) antiparallel overlapping to a CadC-like transcriptional regulator in Escherichia coli O157:H7 Sakai originated by overprinting. BMC Evolutionary Biology 18 (1), 2018 more…
- Finding new overlapping genes and their theory (FOG Theory). In: Information- and Communication Theory in Molecular Biology. Springer International Publishing, 2018, 137-159 more…
- The novel EHEC gene asa overlaps the TEGT transporter gene in antisense and is regulated by NaCl and growth phase. Scientific Reports 8 (1), 2018 more…
2017
- Improving the Reliability of RNA-seq: Approaching Single-Cell Transcriptomics To Explore Individuality in Bacteria. In: Information- and Communication Theory in Molecular Biology. Springer International Publishing, 2017 more…
- Discovery of numerous novel small genes in the intergenic regions of the <em>Escherichia coli</em> O157:H7 Sakai genome. PLOS one (12(9)), 2017, e0184119 more…
- Differentiation of ncRNAs from small mRNAs in <em>Escherichia coli</em> O157:H7 EDL933 (EHEC) by combined RNAseq and RIBOseq-<em>ryhB</em> encodes the regulatory RNA RyhB and a peptide, RyhP. BMC Genomics (18), 2017, 216 more…
- Differentiation of ncRNAs from small mRNAs in Escherichia coli O157:H7 EDL933 (EHEC) by combined RNAseq and RIBOseq – ryhB encodes the regulatory RNA RyhB and a peptide, RyhP. BMC Genomics 18 (1), 2017 more…
2016
- Draft genome sequences of three European laboratory derivatives from enterohemorrhagic <em>Escherichia coli</em> O157:H7 strain EDL933, including two plasmids. Genome Announcements (4(2)), 2016, e01331-15 more…
- Transcriptional and translational regulation by RNA thermometers, riboswitches and the sRNA DsrA in <em>Escherichia coli</em> O157:H7 Sakai under combined cold and osmotic stress adaptation. FEMS Microbiology Letters (364), 2016, 1-9 more…
- Probiotic <em>Enterococcus faecalis<</em> Symbioflor® down regulates virulence genes of EHEC in vitro and decrease pathogenicity in a <em>Caenorhabditis elegans</em> model. Archives of Microbiology (199(2)), 2016, 203-213 more…
- Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in <em>Escherichia coli</em> O157:H7 (EHEC). BMC Genomics (17), 2016, 133 more…
2015
2014
- Comparison of strand-specific transcriptomes of enterohemorrhagic <em>Escherichia coli</em> O157:H7 EDL933 (EHEC) under eleven different environmental conditions including radish sprouts and cattle feces. BMC Genomics (15), 2014, 353 more…
2013
- Phenotype of htgA (mbiA), a recently evolved orphan gene of <em>Escherichia coli</em> and <em>Shigella</em>, completely overlapping in antisense to yaaW. FEMS Microbiology Letters (350), 2013, 57-64 more…
- Life at Low Temperatures. Volume The Prokaryotes - Prokaryotic Communities and Ecophsiology. Springer-Verlag, 2013 more…
- <em>Listeria weihenstephanensis</em> sp. nov., isolated from the water plant <em>Lemna trisula</em> taken from a freshwater pond. International Journal of Systematic and Evolutionary Microbiology (63), 2013, 641-647 more…
- Short Barcodes for Next Generation Sequencing. PLOS one 8 (12, e82933), 2013 more…
- Acid shock of <em>Listeria monocytogenes</em> at low environmental temperatures induces prfA, epithelial cell invasion, and lethality towards <em>Caenorhabditis elegans</em>. BMC Genomics (14), 2013, 285 more…
2012
- Predicting statistical properties of open reading frames in bacterial genomes. PLOS one 7 (9,e45103), 2012, 1-12 more…
- Design of short barcodes for next generation sequencing of DNA and RNA. Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS), IEEE, 2012 more…
2011
- Visual Boosting in Pixel-based Visualizations. Computer Graphics Forum 30 (3), 2011, 871-880 more…
- FTIR-based polyphasic identification of lactic acid bacteria isolated from traditional Greek Graviera cheese. Food Microbiology 28 (1), 2011, 76-83 more…
- Visual analysis of next-generation sequencing data to detect overlapping genes in bacterial genomes. IEEE Symposium on Biological Data Visualization, 2011, 47-54 more…
2010
- <em>Vibrio casei</em> sp.nov., isolated from the surface of two French red smear soft cheeses. Int J Syst Evol Microbiology (60), 2010, 1745-1749 more…
- High biodiversity and potent anti-listerial action of complex red smear cheese microbial ripening consortia. Annals of Microbiol (60), 2010, 531-539 more…
- Potent antilisterial cell-free supernatants produced by complex red-smear cheese microbial consortia. Journal of Dairy Science 93 (10), 2010, 4497-4505 more…
- Assessment of the anti-listerial activity of microfloras from the surface of smear-ripened cheeses. Food Microbiology (27), 2010, 302-310 more…
- Towards automatic detecting of overlapping genes - Clusters BLAST analysis of viral genomes. In: EvoBio 2010. Springer-Verlag Berlin, 2010, 228-239 more…
2007
- Pathogenomics of <em>Listeria spp.</em>. International Journal of Medical Microbiology 297 (7-8), 2007, 541-557 more…
- Gene Expression Analysis of Corynebacterium glutamicum Subjected to Long-Term Lactic Acid Adaptation. Journal of Bacteriology 189 (15), 2007, 5582-5590 more…
- Remote control of tumour-targeted <em>Salmonella enterica </em>serovar Typhimurium by the use of l-arabinose as inducer of bacterial gene expression<em> in vivo</em>. Cellular Microbiology 9 (6), 2007, 1529-1537 more…
2006
- Transcriptional Analysis of Long-Term Adaptation of <em>Yersinia enterocolitica</em> to Low-Temperature Growth. Journal of Bacteriology 188 (8), 2006, 2945-2958 more…
- Finding Correlations in Functionally Equivalent Proteins by Integrating Automated and Visual Data Exploration. Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06), IEEE, 2006 more…
- Finding Correlations in Functionally Equivalent Proteins by Integrating Automated and Visual Data Exploration. Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06), IEEE, 2006 more…
- Life at low temperatures. (Review). In: The Prokaryotes.. Springer-Verlag, 2006, 210-262 more…
2003
- The AGUAAA motif in cspA1/A2 mRNA is important for adaptation of<em> Yersinia enterocolitica</em> to grow at low temperature. Molecular Microbiology 50 (5), 2003, 1629-1645 more…
2002
- Sensitive In Situ Monitoring of a Recombinant Bioluminescent<em> Yersinia enterocolitica</em> Reporter Mutant in Real Time on Camembert Cheese. Applied and Environmental Microbiology 68 (11), 2002, 5737-5740 more…
2000
- Restart of Exponential Growth of Cold-Shocked <em>Yersinia enterocolitica</em> Occurs after Down-Regulation of cspA1/A2 mRNA. Journal of Bacteriology 182 (11), 2000, 3285-3288 more…
- Arabidopsis Plants Transformed with Nitrilase 1 or 2 in Antisense Direction are Delayed in Clubroot Development. Journal of Plant Physiology 156 (5-6), 2000, 756-761 more…
1999
- Erratum to “Rapid discrimination of psychrotolerant and mesophilic strains of the <em>Bacillus cereus </em>group by PCR targeting of 16S rDNA”. Journal of Microbiological Methods 35 (2), 1999, 185 more…
- Pathogenic <em>Yersinia</em> Species Carry a Novel, Cold-Inducible Major Cold Shock Protein Tandem Gene Duplication Producing both Bicistronic and Monocistronic mRNA. Journal of Bacteriology, 1999 more…
1998
- Physiological analysis of transgenic Arabidopsis thaliana plants expressing one nitrilase isoform in sense or antisense direction. Journal of Plant Physiology 153 (3-4), 1998, 446-456 more…
- Rapid discrimination of psychrotolerant and mesophilic strains of the<em> Bacillus cereus </em>group by PCR targeting of 16S rDNA. Journal of Microbiological Methods 34 (2), 1998, 99-106 more…